In comparative proteomics studies, LC-MS/MS data is generally quantified using one or both of two measures: the spectral count, derived from the identification of MS/MS spectra, or some measure of ion abundance derived from the LC-MS data. Here we contrast the performance of these measures and show that ion abundance is the more sensitive. We also examine how the conclusions of a comparative an...

The application of mass spectrometry (MS) to the study of progressively larger and more complex macromolecular assemblies is proving increasingly useful for structural biologists. The scope of this approach has recently been widened through the application of a tandem MS procedure. This two-step technique involves the selection of specific assemblies in the gas phase and inducing their dissocia...

An overview of chromatography-mass spectrometry coupling is presented here, focussing mainly on possibilities offered by this detection technique. GC-MS and HPLC-MS are the two most often used variants, which have quite different characteristics. Various mass-spectrometric possibilities are briefly discussed: ionization techniques, determination of elemental formulas, structural information and...

mutation has an incidence of 43.5% (4 ), lower than in the rest of Spain (53.2%) (3 ), the incidence of these 11 mutations may be higher. Used in conjunction with the 31 mutations analyzed with the CF Genetic Analysis assay from Applied Biosystems, the multimutational analysis of the 11 mutations presented here could enhance the detection rate in Spanish and Mediterranean populations to 80%.

A novel MS/MS-based analysis strategy using isotopomer labels, referred to as "tandem mass tags" (TMTs), for the accurate quantification of peptides and proteins is described. The new tags are designed to ensure that identical peptides labeled with different TMTs exactly comigrate in all separations. The tags require novel methods of quantification analysis using tandem mass spectrometry. The n...