نتایج جستجو برای: throughput nucleotide sequencing

تعداد نتایج: 307622  

Journal: :Conservation Genetics 2023

Genetic species identification is often necessary for flocks, such as rockfishes in the genus Sebastes (Teleostei, Scorpaenidae). Traditional visual methods are challenged by presence of many sympatric rockfish with morphologically similar juveniles. Here we present a straightforward approach using 96 nuclear microhaplotype loci that can be efficiently genotyped high-throughput DNA sequencing. ...

Journal: :Frontiers in virology 2022

An unprecedented use of high-throughput sequencing for routine monitoring SARS-CoV-2 viruses in patient samples has created a dataset over 6 million genomes. To monitor genomes, deposited the GISAID database, and to track continuous sequence evolution molecular assay oligonucleotide target sequences. A simple pipeline tool non-experts was developed mine this database nucleotide changes oligonuc...

2015
Nur Fatihah Mohd-Yusoff Pradeep Ruperao Nurain Emylia Tomoyoshi David Edwards Peter M. Gresshoff Bandana Biswas Jacqueline Batley

Genetic structure can be altered by chemical mutagenesis, which is a common method applied in molecular biology and genetics. Second-generation sequencing provides a platform to reveal base alterations occurring in the whole genome due to mutagenesis. A model legume, Lotus japonicus ecotype Miyakojima, was chemically mutated with alkylating ethyl methanesulfonate (EMS) for the scanning of DNA l...

پایان نامه :وزارت علوم، تحقیقات و فناوری - دانشگاه شهرکرد - دانشکده دامپزشکی 1388

چکیده لاکتوز مهم ترین کربوهیدرات و اسمولیت (osmolit) اصلی در شیر می باشد. این ترکیب توسط هترودیمر پروتئینی لاکتوز سنتاز واقع در سلول های اپیتلیال غدد پستانی سنتز می گردد. لاکتوز سنتاز از دو جزء آلفا-لاکتالبومین (?-la) و بتا 1،4-گالاکتوزیل ترانسفراز (?4gal-t1) تشکیل شده است. در مطالعه ی حاضر کل ژن ?-la در نواحی کد شونده (اگزون) (exon) و غیر کد شونده (اینترون) (intron) 100 نمونه از گاوهای هولشتا...

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2005
Hameer Ruparel Lanrong Bi Zengmin Li Xiaopeng Bai Dae Hyun Kim Nicholas J Turro Jingyue Ju

DNA sequencing by synthesis (SBS) offers an approach for potential high-throughput sequencing applications. In this method, the ability of an incoming nucleotide to act as a reversible terminator for a DNA polymerase reaction is an important requirement to unambiguously determine the identity of the incorporated nucleotide before the next nucleotide is added. A free 3'-OH group on the terminal ...

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2011
Julius B Lucks Stefanie A Mortimer Cole Trapnell Shujun Luo Sharon Aviran Gary P Schroth Lior Pachter Jennifer A Doudna Adam P Arkin

New regulatory roles continue to emerge for both natural and engineered noncoding RNAs, many of which have specific secondary and tertiary structures essential to their function. Thus there is a growing need to develop technologies that enable rapid characterization of structural features within complex RNA populations. We have developed a high-throughput technique, SHAPE-Seq, that can simultan...

Journal: :iranian journal of parasitology 0
mohammad matini dept. of medical parasitology and mycology, school of medicine, hamadan university of medical sciences, hamadan, iran and dept. of medical parasitology and mycology, school of public health, tehran university of medical sciences, tehran, iran. sassan rezaie dept. of medical parasitology and mycology, school of public health, tehran university of medical sciences, tehran, iran. mahdi mohebali dept. of medical parasitology and mycology, school of public health, tehran university of medical sciences, tehran, iran and center for research of endemic parasites of iran (crepi), tehran university of medical sciences, tehran, iran. amir-hossein maghsood dept. of medical parasitology and mycology, school of medicine, hamadan university of medical sciences, hamadan, iran. soghra rabiee dept. of obstetrics and gynecology, fatemieh women hospital, school of medicine, hamadan university of medical sciences, hamadan, iran. mohammad fallah dept. of medical parasitology and mycology, school of medicine, hamadan university of medical sciences, hamadan, iran.

background: trichomonas vaginalis is the agent of urogenital tract infection that causes human trichomoniasis with some serious health complications. more understanding about genetic features of the parasite can be helpful in the study of the pathogenesis, drug susceptibility and epidemiology of the infection. for this end,we conducted analysis of the actin gene of t. vaginalis by applying the ...

Journal: :Molecular pathology : MP 1999
J S Randhawa A J Easton

The determination of the nucleotide sequence of a gene is often the ultimate goal of a research project and the frequency with which new sequences are described in the literature and computer databases is remarkable. The basic techniques that underpin these endeavours are remarkably simple and their description now frequently forms part of the very earliest portion of a biological science under...

Journal: :Plant biotechnology journal 2016
Kai Voss-Fels Rod J Snowdon

High-resolution genome analysis technologies provide an unprecedented level of insight into structural diversity across crop genomes. Low-cost discovery of sequence variation has become accessible for all crops since the development of next-generation DNA sequencing technologies, using diverse methods ranging from genome-scale resequencing or skim sequencing, reduced-representation genotyping-b...

2016
Jens Friis-Nielsen Kristín Rós Kjartansdóttir Sarah Mollerup Maria Asplund Tobias Mourier Randi Holm Jensen Thomas Arn Hansen Alba Rey-Iglesia Stine Raith Richter Ida Broman Nielsen David E. Alquezar-Planas Pernille V. S. Olsen Lasse Vinner Helena Fridholm Lars Peter Nielsen Eske Willerslev Thomas Sicheritz-Pontén Ole Lund Anders Johannes Hansen Jose M. G. Izarzugaza Søren Brunak

Virus discovery from high throughput sequencing data often follows a bottom-up approach where taxonomic annotation takes place prior to association to disease. Albeit effective in some cases, the approach fails to detect novel pathogens and remote variants not present in reference databases. We have developed a species independent pipeline that utilises sequence clustering for the identificatio...

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