Technology in microscopy advances rapidly, enabling increasingly affordable, faster, and more precise quantitative biomedical imaging, which necessitates correspondingly more-advanced image processing and analysis techniques. A wide range of software is available-from commercial to academic, special-purpose to Swiss army knife, small to large-but a key characteristic of software that is suitabl...

BACKGROUND AND OBJECTIVE The effective processing of biomedical images usually requires the interoperability of diverse software tools that have different aims but are complementary. The goal of this work is to develop a bridge to connect two of those tools: ImageJ, a program for image analysis in life sciences, and OpenCV, a computer vision and machine learning library. METHODS Based on a th...

ImageJ is an essential tool for us that fulfills most of our routine image processing and analysis requirements. The near-comprehensive range of import filters that allow easy access to image and meta-data, a broad suite processing and analysis routine, and enthusiastic support from a friendly mailing list are invaluable for all microscopy labs and facilities-not just those on a budget.

Summary SMLocalizer combines the availability of ImageJ with the power of GPU processing for fast and accurate analysis of single molecule localization microscopy data. Analysis of 2D and 3D data in multiple channels is supported. Availability and implementation Plugin freely available for Fiji and ImageJ2.0 through https://sourceforge.net/projects/smlocalizer/. Plugin also available for cont...

tronomy. It is common practice for manufacturers of image acquisition devices to include dedicated image processing software, but these programs are usually not very flexible and/or do not allow more complex image manipulations. Image processing programs also are available by themselves. ImageJ holds a unique position because T he advances of the medical and biological sciences over recent year...

After having developed three ImageJ plugins that use 3D display techniques of image data (Color Inspector 3D, 3D Surface Plot, and Volume Viewer), the idea came up that these plugins do share a lot of common algorithms that could also be used for other plugins which need a 3D display of (image) data. The workshop concerning 3D-Data Representation with ImageJ that will be given at the “ImageJ Us...

Rationale and Objectives: Ischemic strokes represent more than 80% of all stroke cases and are characterized by the occlusion of a blood vessel due to a thrombus or embolus. The temporal evolution of ischemic strokes occurs in four stages, i.e. Hyperacute, Acute, Subacute and Chronic. CT image by using ImageJ software help to identify stages of ischemic stroke in human brain as an alternative m...