نتایج جستجو برای: autodock

تعداد نتایج: 777  

2012
Wuhong Li Changhai Liu Guangguo Tan Xinrong Zhang Zhenyu Zhu Yifeng Chai

Chiral separations of five β-adrenergic antagonists (propranolol, esmolol, atenolol, metoprolol, and bisoprolol) were studied by capillary electrophoresis using six cyclodextrins (CDs) as the chiral selectors. Carboxymethylated-β-cyclodextrin (CM-β-CD) exhibited a higher enantioselectivity power compared to the other tested CDs. The influences of the concentration of CM-β-CD, buffer pH, buffer ...

2014
Uyen B. Chu Sevahn K. Vorperian Kenneth Satyshur Kelsey Eickstaedt Nicholas V. Cozzi Timur Mavlyutov Abdol R. Hajipour Arnold E. Ruoho

Indolethylamine-N-methyltransferase (INMT) is a Class 1 transmethylation enzyme known for its production of N,N-dimethyltryptamine (DMT), a hallucinogen with affinity for various serotonergic, adrenergic, histaminergic, dopaminergic, and sigma-1 receptors. DMT is produced via the action of INMT on the endogenous substrates tryptamine and S-adenosyl-l-methionine (SAM). The biological, biochemica...

2011
Sergey A. Samsonov Joan Teyra M. Teresa Pisabarro

Glycosaminoglycans (GAGs) are anionic polysaccharides, which participate in key processes in the extracellular matrix by interactions with protein targets. Due to their charged nature, accurate consideration of electrostatic and water-mediated interactions is indispensable for understanding GAGs binding properties. However, solvent is often overlooked in molecular recognition studies. Here we a...

2010

The co-crystal of HA X-31 and a promising small molecule inhibitor, tert-butyl hydroquinone (TBHQ) 1 , was solved back in 2008 (PDBID: 3EYM) 8. Visual inspection of the 3EYM's TBHQ binding pocket via Chimera 7 reaffirmed TBHQ's drug-like potential and the interactions noted in Russel et al. The structural differences between Group 1 and Group 2 HA were confirmed using the matchmaker function pr...

پایان نامه :وزارت علوم، تحقیقات و فناوری - دانشگاه علوم پایه دامغان - دانشکده شیمی 1386

مقادیر ثابت اتصال 80 ترکیب دارویی مختلف به آلبومین انسانی (hsa) و 13 ترکیب دیگر به آنزیم آدنوزین دآمیناز (ada) با استفاده از الگوریتم ژنتیک لامارکیان موجود در نرم افزار autodock 3.0 بررسی، محاسبه و با داده های تجربی مقایسه شد. پروتئین و ترکیب دارویی درون سلی به ابعاد ?3 126×126×126 قرار گرفتند. تعداد مراحل الگوریتم، تعداد جمعیت در هر نسل، ماکزیمم تعداد ارزیابی های انرژی و ماکزیمم تعداد نسل ها ب...

Journal: :World Journal of Current Medical and Pharmaceutical Research 2023

A new drug takes a long time and is expensive to introduce.By using insilico design, you can save money. Utilizing computational software, novel Schiff's base Dibenzosuberenone derivative was designed molecular docking studies were performed autodock software. To predict Absorption, Distribution, Metabolism, Excretion, Molecular Properties of derivatives, screening performed. It should be exami...

پایان نامه :وزارت علوم، تحقیقات و فناوری - دانشگاه علوم پایه دامغان - دانشکده شیمی 1391

برهمکنش دو کمپلکس تری کلرو و تری برمو فنانتریدین طلای (iii) با dna طحال گوساله (dna-ct( بوسیله ی روش های: جذب uv، نشر فلوئورسانس، ویسکوزیته، دو رنگ نمایی دورانی، ولتامتری چرخه ای و تکنیک حالت گذار dna مورد بررسی قرار گرفت. نتایج حاصل از روش های مختلف حاکی از این بود که در سیستم برهمکنش از نوع اینترکلیشن وجود دارد. مقادیر ثابت اتصال بوسیله روش های جذب uv و نشر فلوئورسانس برای کمپلکس [au(phend)cl...

2011
Hamed Ismail Ali Tomofumi Nagamatsu Eiichi Akaho

Different classes of compounds were investigated for their binding affinities into different protein tyrosine kinases (PTKs) employing a novel flexible ligand docking approach by using AutoDock 3.05 and 4. These compounds include many flavin analogs, which were developed in our group with varying degrees of cytotoxic activity (comparable or moderately superior to cisplatin and ara-c), and datab...

Journal: :Journal of nanotechnology in diagnosis and treatment 2022

Kinases are phosphate catalysing enzymes that have traditionally proved difficult to target against ligands,and hence inefficacious in drug development. There two colluding reasons for this. First is the issue of specificity. The homogeneity exists between kinase ATP-binding pockets makes it a non-realisable developcompounds would inhibit only one out 538 protein kinases encoded by human genome...

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