In a previous communication (T.R. Breitman and R. M. Bradford, Biochim. Biophys. Acta 138:217, 1967), we reported that Escherichia coli 70V3, a low thymine-requiring mutant of Escherichia coli 15, lacked deoxyriboaldolase activity, establishing a biochemical basis for the low requirement. Also presented were data indicating that both deoxythymidine phosphorylase and deoxyriboaldolase were induc...

The synthesis of phosphonate analogues of ribose-1-phosphate and 5-fluoro-5-deoxyribose-1-phosphate is described. Preparations of both the alpha- and beta-phosphonate anomers are reported for the ribose and 5-fluoro-5-deoxyribose series and a synthesis of the corresponding cyclic phostones of each alpha-ribose is also reported. These compounds have been prepared as tools to probe the details of...

High-throughput​ ​genetics​ ​is​ ​a ​ ​powerful ​ ​approach ​ ​to ​ ​identify​ ​new​ ​genes​ ​involved ​ ​in ​ ​bacterial carbon ​ ​catabolism.​ ​Here,​ ​we ​ ​used ​ ​genome-wide ​ ​fitness​ ​assays​ ​to ​ ​identify​ ​a ​ ​novel ​ ​pathway​ ​for 2-deoxy-D-ribose ​ ​catabolism​ ​in ​ ​​Pseudomonas​ ​simiae​ ​​WCS417.​ ​The ​ ​genes​ ​that​ ​were ​ ​important for​ ​deoxyribose ​ ​utilization ​ ​...

Genomic integrity is constantly challenged by DNA damaging agents such as reactive oxygen species (ROS). Consequently, DNA damage can compromise the fidelity and efficiency of essential DNA metabolic processes, including replication and transcription, which may contribute significantly to the etiology of many human diseases. Here, we review one family of DNA lesions, the epimeric 2-deoxyribose ...

The effects of histamine H2-receptor antagonists, alone or in a combination with bismuth, on *OH-provoked degradation of deoxyribose were studied. The histamine H2-receptor antagonists (cimetidine, ranitidine and roxatidine), themselves decreased the deoxyribose damage in Fenton-type systems. In combinations with bismuth, their inhibitory effect in Fenton system (Fe(III)/ascorbic acid + H2O2 wa...

The studies reported here are concerned with the biosynthesis of ribose and deoxyribose in Escherichia coli R-2. When these studies were undertaken the evidence available allowed no general conclusions to be drawn as to a common biosynthetic pathway for the two pentoses. Since that time numerous studies have contributed to a better understanding of the problem. Tracer studies on the origin of r...