OncoLnc is a tool for interactively exploring survival correlations, and for downloading clinical data coupled to expression data for mRNAs, miRNAs, or long noncoding RNAs (lncRNAs). OncoLnc contains survival data for 8,647 patients from 21 cancer studies performed by The Cancer Genome Atlas (TCGA), along with RNA-SEQ expression for mRNAs and miRNAs from TCGA, and lncRNA expression from MiTrans...

Abstract Although next-generation sequencing is widely used in cancer to profile tumors and detect variants, most somatic variant callers these pipelines identify variants at the lowest possible granularity, single-nucleotide (SNV). As a result, multiple adjacent SNVs are called individually instead of as multi-nucleotide (MNV). With this approach, amino acid change from individual SNV within c...