A Study of Flexible Protein Structure Alignment Using Three Dimensional Local Similarities
نویسندگان
چکیده
منابع مشابه
Coupled BE-FE Scheme for Three-Dimensional Dynamic Interaction of a Transversely Isotropic Half-Space with a Flexible Structure
The response of structures bonded to the surface of a transversely isotropic half-space (TIHS) under the effect of time-harmonic forces is investigated using a coupled FE-BE scheme. To achieve this end, a Finite Element program has been developed for frequency domain analysis of 3D structures, as the first step. The half-space underlying the structure is taken into consideration using a Boundar...
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We have recently developed a flexible protein structure alignment program (FATCAT) that identifies structural similarity, at the same time accounting for flexibility of protein structures. One of the most important applications of a structure alignment method is to aid in functional annotations by identifying similar structures in large structural databases. However, none of the flexible struct...
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The protein structure alignment problem addresses the question of measuring the degree of similarity, in three–dimensional structure, of two proteins. The representation of each protein using a simple contact map allows the correspondence graph for the protein pair to be generated and the maximum clique within this graph provides a measure of the structural similarity between the two proteins. ...
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ژورنال
عنوان ژورنال: The KIPS Transactions:PartB
سال: 2009
ISSN: 1598-284X
DOI: 10.3745/kipstb.2009.16b.5.359