Accelerating Weeder: A DNA Motif Search Tool Using the Micron Automata Processor and FPGA
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چکیده
منابع مشابه
Accelerating Weeder: A DNA Motif Search Tool Using the Micron Automata Processor and FPGA
Motif searching, i.e., identifying meaningful patterns from biological data, has been studied extensively due to its importance in the biomedical sciences. In this work, we seek to improve the performance of Weeder, a widely-used tool for automatic de novo motif searching. Weeder consists of several functions, among which we find that the function namely oligo_scan, which handles the pattern ma...
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ژورنال
عنوان ژورنال: IEICE Transactions on Information and Systems
سال: 2017
ISSN: 0916-8532,1745-1361
DOI: 10.1587/transinf.2017edp7051