Bayesian Divergence-Time Estimation with Genome-Wide Single-Nucleotide Polymorphism Data of Sea Catfishes (Ariidae) Supports Miocene Closure of the Panamanian Isthmus
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چکیده
منابع مشابه
Fine-scale estimation of location of birth from genome-wide single-nucleotide polymorphism data.
Systematic nonrandom mating in populations results in genetic stratification and is predominantly caused by geographic separation, providing the opportunity to infer individuals' birthplace from genetic data. Such inference has been demonstrated for individuals' country of birth, but here we use data from the Northern Finland Birth Cohort 1966 (NFBC1966) to investigate the characteristics of ge...
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As more and more genomic DNAs are sequenced to characterize human genetic variations, the demand for a very fast and accurate method to genomically position these DNA sequences is high. We have developed a new mapping method that does not require sequence alignment. In this method, we first identified DNA fragments of 15 bp in length that are unique in the human genome and then used them to pos...
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Title of Document: BAYESIAN ESTIMATION OF THE INBREEDING COEFFICIENT FOR SINGLE NUCLEOTIDE POLYMORPHISM USING COMPLEX SURVEY DATA Zhenyi Xue, Doctor of Philosophy, 2015 Directed By: Professor Partha Lahiri Associate Professor Yan Li Joint Program in Survey Methodology In genome-wide association studies (GWAS), single nucleotide polymorphism (SNP) is often used as a genetic marker to study gene-...
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cement is an essential ingredient in the concrete buildings. for production of cement considerable amount of fossil fuel and electrical energy is consumed. on the other hand for generating one tone of portland cement, nearly one ton of carbon dioxide is released. it shows that 7 percent of the total released carbon dioxide in the world relates to the cement industry. considering ecological issu...
Application of sex-specific single-nucleotide polymorphism filters in genome-wide association data
We explored five sex-specific quality control filters in North American Rheumatoid Arthritis Consortium's Illumina 550 k datasets. Three X chromosome and three autosomal single-nucleotide polymorphisms flagged by sex quality control filters were missed by filters of call rate at 95% and Hardy-Weinberg equilibrium at 10-6. We applied a subset of these sex-specific quality control filters to eigh...
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ژورنال
عنوان ژورنال: Systematic Biology
سال: 2018
ISSN: 1063-5157,1076-836X
DOI: 10.1093/sysbio/syy006