Bootstrap method of interior-branch test for phylogenetic trees

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Bootstrap method of interior-branch test for phylogenetic trees.

Statistical properties of the bootstrap test of interior branch lengths of phylogenetic trees have been studied and compared with those of the standard interior-branch test in computer simulations. Examination of the properties of the tests under the null hypothesis showed that both tests for an interior branch of a predetermined topology are quite reliable when the distribution of the branch l...

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Interior-branch and bootstrap tests of phylogenetic trees.

We have compared statistical properties of the interior-branch and bootstrap tests of phylogenetic trees when the neighbor-joining tree-building method is used. For each interior branch of a predetermined topology, the interior-branch and bootstrap tests provide the confidence values, PC and PB, respectively, that indicate the extent of statistical support of the sequence cluster generated by t...

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Evolutionary trees are often estimated from DNA or RNA sequence data. How much confidence should we have in the estimated trees? In 1985, Felsenstein [Felsenstein, J. (1985) Evolution 39, 783-791] suggested the use of the bootstrap to answer this question. Felsenstein's method, which in concept is a straightforward application of the bootstrap, is widely used, but has been criticized as biased ...

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ژورنال

عنوان ژورنال: Molecular Biology and Evolution

سال: 1996

ISSN: 0737-4038,1537-1719

DOI: 10.1093/oxfordjournals.molbev.a025620