Calibration plot for proteomics: A graphical tool to visually check the assumptions underlying FDR control in quantitative experiments

FDR adjustments of Microarray Experiments (FDR-AME)

Purpose This R package adjusts p-values generated in multiple hypotheses testing of gene expression data obtained by a microarray experiment. The software applies multiple testing procedures that control the False Discovery Rate (FDR) criterion introduced by Benjamini and Hochberg (1995). It applies both theoretical-distribution-based and resampling-based multiple testing procedures, and presen...

from linguistics to literature: a linguistic approach to the study of linguistic deviations in the turkish divan of shahriar

chapter i provides an overview of structural linguistics and touches upon the saussurean dichotomies with the final goal of exploring their relevance to the stylistic studies of literature. to provide evidence for the singificance of the study, chapter ii deals with the controversial issue of linguistics and literature, and presents opposing views which, at the same time, have been central to t...

Empirical Bayes Analysis of Quantitative Proteomics Experiments

BACKGROUND Advances in mass spectrometry-based proteomics have enabled the incorporation of proteomic data into systems approaches to biology. However, development of analytical methods has lagged behind. Here we describe an empirical Bayes framework for quantitative proteomics data analysis. The method provides a statistical description of each experiment, including the number of proteins that...

proteomics a key tool for a better understanding of endometriosis:

endometriosis is a painful reproductive disease afflicting about up to 20% of women. it is one of the most frequent benign gynaecological diseases, however, little is known about the pathological of endometriosis. over the past decade, high-throughput proteomics technologies have evolved considerably and have become increasingly more commonly applied to the investigation of female reproductive ...

The SSR Plot: A Graphical Representation for Regression