ERD: a fast and reliable tool for RNA design including constraints
نویسندگان
چکیده
منابع مشابه
RNAplex: a fast tool for RNA-RNA interaction search
MOTIVATION Regulatory RNAs often unfold their action via RNA-RNA interaction. Transcriptional gene silencing by means of siRNAs and miRNA as well as snoRNA directed RNA editing rely on this mechanism. Additionally ncRNA regulation in bacteria is mainly based upon RNA duplex formation. Finding putative target sites for newly discovered ncRNAs is a lengthy task as tools for cofolding RNA molecule...
متن کاملGeographic Information System (GIS): A Reliable Tool for Monitoring COVID-19 in Iran and the World
This article has no abstract.
متن کاملA Design Methodology for Reliable MRF-Based Logic Gates
Probabilistic-based methods have been used for designing noise tolerant circuits recently. In these methods, however, there is not any reliability mechanism that is essential for nanometer digital VLSI circuits. In this paper, we propose a novel method for designing reliable probabilistic-based logic gates. The advantage of the proposed method in comparison with previous probabilistic-based met...
متن کاملRNAplex a Fast and Flexible RNA-RNA Interaction Search Tool
Regulatory RNAs often unfold their action via RNA-RNA interaction. Transcriptional gene silencing by means of siRNAs and miRNA as well as snoRNA directed RNA editing rely on this mechanism. ncRNA regulation in bacteria is mainly based upon RNA duplex formation. Finding putative target sites for newly discovered ncRNAs is a lengthy task as tools for cofolding RNA molecules like RNAcofold and RNA...
متن کاملOSA: a fast and accurate alignment tool for RNA-Seq
UNLABELLED Accurately mapping RNA-Seq reads to the reference genome is a critical step for performing downstream analysis such as transcript assembly, isoform detection and quantification. Many tools have been developed; however, given the huge size of the next generation sequencing datasets and the complexity of the transcriptome, RNA-Seq read mapping remains a challenge with the ever-increasi...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: BMC Bioinformatics
سال: 2015
ISSN: 1471-2105
DOI: 10.1186/s12859-014-0444-5