eUTOPIA: solUTion for Omics data PreprocessIng and Analysis

Novel Preprocessing Approaches for Omics Data Types and Their Performance Evaluation

Improving the Performance of ICA Algorithm for fMRI Simulated Data Analysis Using Temporal and Spatial Filters in the Preprocessing Phase

Introduction: The accuracy of analyzing Functional MRI (fMRI) data is usually decreases in the presence of noise and artifact sources. A common solution in for analyzing fMRI data having high noise is to use suitable preprocessing methods with the aim of data denoising. Some effects of preprocessing methods on the parametric methods such as general linear model (GLM) have previously been evalua...

Preprocessing CVS Data for Fine-Grained Analysis

All analyses of version archives have one phase in common: the preprocessing of data. Preprocessing has a direct impact on the quality of the results returned by an analysis. In this paper we discuss four essential preprocessing tasks necessary for a fine-grained analysis of CVS archives: (a) data extraction, (b) transaction recovery, (c) mapping of changes to fine-grained entities, and (d) dat...

Computational methods for integrated analysis of omics and pathway data

. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ix 1. GENERAL INTRODUCTION . . . . . . . . . . . . . . . . . . . . . . . . . . 1 2. A COMPUTATIONAL PLATFORM TO MAINTAIN AND MIGRATE MANUAL FUNCTIONAL ANNOTATIONS FOR BIOCYC DATABASES 9 Abstract . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 9 Background . . . . . . . . . . . . ....

Anvi’o: an advanced analysis and visualization platform for ‘omics data

Advances in high-throughput sequencing and 'omics technologies are revolutionizing studies of naturally occurring microbial communities. Comprehensive investigations of microbial lifestyles require the ability to interactively organize and visualize genetic information and to incorporate subtle differences that enable greater resolution of complex data. Here we introduce anvi'o, an advanced ana...