GABAC: an arithmetic coding solution for genomic data

نویسندگان
چکیده

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Arithmetic Coding for Data Compression

Arithmetic coding provides an e ective mechanism for removing redundancy in the encoding of data. We show how arithmetic coding works and describe an e cient implementation that uses table lookup as a fast alternative to arithmetic operations. The reduced-precision arithmetic has a provably negligible e ect on the amount of compression achieved. We can speed up the implementation further by use...

متن کامل

Analysis of Arithmetic Coding for Data Compression

Arithmetic coding, in conjunction with a suitable probabilistic model, can provide nearly optimal data compression. In this article we analyze the effect that the model and the particular implementation of arithmetic coding have on the code length obtained. Periodic scaling is often used in arithmetic coding implementations to reduce time and storage requirements; it also introduces a recency e...

متن کامل

Bit-Wise Arithmetic Coding for Data Compression

This article examines the problem of compressing a uniformly quantized IID source. We present a new compression technique, bit-wise arithmetic coding, that assigns xed length codewords to the quantizer output and uses arithmetic coding to compress the codewords, treating the codeword bits as independent. We examine the performance of this method and evaluate the overhead required when used bloc...

متن کامل

Reversible arithmetic coding for quantum data compression

We study the problem of compressing a block of symbols (a block quantum state) emitted by a memoryless quantum Bernoulli source. We present a simple-to-implement quantum algorithm for projecting, with high probability, the block quantum state onto the typical subspace spanned by the leading eigenstates of its density matrix. We propose a fixed-rate quantum Shannon–Fano code to compress the proj...

متن کامل

An Introduction to Arithmetic Coding

Arithmetic coding is a data compression technique that encodes data (the data string) by creating a code string which represents a fractional value on the number line between 0 and 1. The coding algorithm is symbolwise recursive; i.e., it operates upon and encodes (decodes) one data symbol per iteration or recursion. On each recursion, the algorithm successively partitions an interval of the nu...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

ژورنال

عنوان ژورنال: Bioinformatics

سال: 2019

ISSN: 1367-4803,1460-2059

DOI: 10.1093/bioinformatics/btz922