Generic eukaryotic core promoter prediction using structural features of DNA

نویسندگان
چکیده

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Generic eukaryotic core promoter prediction using structural features of DNA.

Despite many recent efforts, in silico identification of promoter regions is still in its infancy. However, the accurate identification and delineation of promoter regions is important for several reasons, such as improving genome annotation and devising experiments to study and understand transcriptional regulation. Current methods to identify the core region of promoters require large amounts...

متن کامل

Common DNA structural features exhibited by eukaryotic ribosomal gene promoters.

Nucleotide sequences of DNA regions containing eukaryotic ribosomal promoters were analysed using strategies designed to reveal sequence-directed structural features. DNA curvature, duplex stability and pattern of twist angle variation were studied by computer modelling. Although ribosomal promoters are known to lack sequence homology (unless very closely related species are considered), invest...

متن کامل

Prediction of DNA-Binding Proteins from Structural Features

We use logic-based machine learning to distinguish DNAbinding proteins from non-binding proteins. We combine previously suggested coarse-grained features (such as the dipole moment) with automatically constructed structural (spatial) features. Prediction based only on structural features already improves on the state-of-the-art predictive accuracies achieved in previous work with coarse-grained...

متن کامل

Computational prediction of Ds transposon insertion sites in plants using DNA structural features

..................................................................................................................... iii CHAPTER 1 GENERAL INTRODUCTION ................................................................ 1 BIOLOGY OF AC/DS TRANSPOSON .......................................................................................... 1 DNA STRUCTURAL PROPERTIES .................................

متن کامل

Promoter Prediction Using Physico-Chemical Properties of DNA

The ability to locate promoters within a section of DNA is known to be a very difficult and very important task in DNA analysis. We document an approach that incorporates the concept of DNA as a complex molecule using several models of its physico-chemical properties. A support vector machine is trained to recognise promoters by their distinctive physical and chemical properties. We demonstrate...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

ژورنال

عنوان ژورنال: Genome Research

سال: 2008

ISSN: 1088-9051

DOI: 10.1101/gr.6991408