SRMA: an R package for resequencing array data analysis
نویسندگان
چکیده
منابع مشابه
RPPanalyzer toolbox: an improved R package for analysis of reverse phase protein array data.
Analysis of large-scale proteomic data sets requires specialized software tools, tailored toward the requirements of individual approaches. Here we introduce an extension of an open-source software solution for analyzing reverse phase protein array (RPPA) data. The R package RPPanalyzer was designed for data preprocessing followed by basic statistical analyses and proteomic data visualization. ...
متن کاملGeoXp: An R Package for Exploratory Spatial Data Analysis
We present GeoXp, an R package implementing interactive graphics for exploratory spatial data analysis. We use data bases coming from the spdep package to illustrate the use of these exploratory techniques based on the coupling between a statistical graph and a map. Besides elementary plots like boxplots, histograms or simple scatterplots, GeoXp also couples maps with Moran scatterplots, variog...
متن کاملIdentification of rare DNA variants using SRMA
It is still challenging to identify rare functional DNA variants. Custom array-based resequencing has an advantage of processing hundreds of individuals at reasonable cost and has been used for medical sequencing studies with targeted genes. However, high false positive rate (FPR ∼3%) in detection of heterozygous signals limited the application of this technology. We have previously developed n...
متن کاملopenair - An R package for air quality data analysis
openair is an R package primarily developed for the analysis of air pollution measurement data but which is also of more general use in the atmospheric sciences. The package consists of many tools for importing and manipulating data, and undertaking a wide range of analyses to enhance understanding of air pollution data. In this paper we consider the development of the package with the purpose ...
متن کاملWrapped: An R package for circular data
The Wrapped package computes the probability density function, cumulative distribution function, quantile function and also generates random samples for many univariate wrapped distributions. It also computes maximum likelihood estimates, standard errors, confidence intervals and measures of goodness of fit for nearly fifty univariate wrapped distributions. Numerical illustrations of the packag...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Bioinformatics
سال: 2012
ISSN: 1460-2059,1367-4803
DOI: 10.1093/bioinformatics/bts286