Structural alphabets for conformational analysis of nucleic acids

Conformational analysis of nucleic acids revisited: Curves+

We describe Curves+, a new nucleic acid conformational analysis program which is applicable to a wide range of nucleic acid structures, including those with up to four strands and with either canonical or modified bases and backbones. The program is algorithmically simpler and computationally much faster than the earlier Curves approach, although it still provides both helical and backbone para...

Multivariate curve resolution: a powerful tool for the analysis of conformational transitions in nucleic acids.

A successful application is reported of the multivariate curve resolution alternating least-squares method (MCR-ALS) for the analysis of nucleic acid melting and salt-induced transitions. Under conditions where several structures co-exist in a conformational equilibrium, MCR-ALS analysis of the UV and circular dichroism (CD) spectra at different temperatures, ionic strength and oligonucleotide ...

Structural and Biophysical Studies of Nucleic Acids

Physicochemical and Structural Aspects of Nucleic Acids

A Microfluidic Device for Structural Studies of Nucleic Acids

We assembled a microfluidic device that enables highresolution structural studies of nucleic acids. The device contains a mineral matrix capable of rapidly generating hydroxyl radicals to cleave the solvent accessible backbone of nucleic acids. Protection from radical cleavage (footprinting) can identify protein binding sites or the presence of tertiary structure. Here we report the fabrication...