Transcriptomic Profiling of Cold Stress-Induced Differentially Expressed Genes in Seedling Stage of Indica Rice

نویسندگان

چکیده

Cold stress significantly constrains the growth, development, productivity, and distribution of rice, particularly indica cultivar, known for its susceptibility to cold, limiting cultivation specific regions. This study investigated genes associated with cold responsiveness in roots two cultivars, SQSL (cold-tolerant) XZX45 (cold-susceptible), through transcriptome dynamics analysis during seedling stage. The identified 8144 6427 differentially expressed (DEGs) SQSL, respectively. Among these DEGs, 4672 (G2) were shared by both while 3472 DEGs (G1) XZX45, 1755 (G3) SQSL. Additionally, 572 transcription factors (TFs) from 48 TF families, including WRKY, NAC, bHLH, ERF, bZIP, MYB, C2H2, GRAS, identified. Gene Ontology (GO) enrichment revealed significant G3 group, “response cold” category, highlighting crucial role response Furthermore, Kyoto Encyclopedia Genes Genomes (KEGG) indicated pronounced group metabolic pathways such as “Pyruvate metabolism”, “Glycolysis/Gluconeogenesis”, “Starch sucrose contributing tolerance mechanisms Overall, this provides comprehensive insights into molecular underlying responses informing future genetic improvement strategies enhance susceptible rice cultivars.

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ژورنال

عنوان ژورنال: Plants

سال: 2023

ISSN: ['2223-7747']

DOI: https://doi.org/10.3390/plants12142675