Using the reconfigurable massively parallel architecture COPACOBANA 5000 for applications in bioinformatics
نویسندگان
چکیده
منابع مشابه
Using the reconfigurable massively parallel architecture COPACOBANA 5000 for applications in bioinformatics
Currently several computational problems require high processing power to handle huge amounts of data, although underlying core algorithms appear to be rather simple. Especially in the area of bioinformatics, algorithms implemented in PCs do not utilize all hardware functionalities provided by standard CPUs. As the demand for efficient utilization and speed up increases, this leads to a boost i...
متن کاملA Massively Parallel Architecture for Bioinformatics
Today’s general purpose computers lack in meeting the requirements on computing performance for standard applications in bioinformatics like DNA sequence alignment, error correction for assembly, or TFBS finding. The size of DNA sequence databases doubles twice a year. On the other hand the advance in computing performance per unit cost only doubles every 2 years. Hence, ingenious approaches ha...
متن کاملMassively Parallel Wireless Reconfigurable Processor Architecture and Programming
We propose a massively parallel recon gurable processor architecture targetted for the implementation of advanced wireless communication algorithms that feature matrix computations. A design methodology for programming and con guring the processor architecture is developed. The design entry point is the space representation of the algorithm in Simulink. The Simulink description is parsed and th...
متن کاملMassively Parallel Processing: Architecture
INTRODUCTION Organizations today require a great deal more processing power to accommodate new kinds of applications, such as an information delivery facility, data mining, and electronic commerce. This need for large computing cycles may be met relatively inexpensively through massively parallel processing. Although massively parallel processors have been around for some time, their use has be...
متن کاملMassively Parallelized DNA Motif Search on the Reconfigurable Hardware Platform COPACOBANA
An enhanced version of an existing motif search algorithm BMA is presented. Motif searching is a computationally expensive task which is frequently performed in DNA sequence analysis. The algorithm has been tailored to fit on the COPACOBANA architecture, which is a massively parallel machine consisting of 120 FPGA chips. The performance gained exceeds that of a standard PC by a factor of over 1...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Procedia Computer Science
سال: 2010
ISSN: 1877-0509
DOI: 10.1016/j.procs.2010.04.114