Diffusion NMR studies of macromolecular complex formation, crowding and confinement in soft materials.
نویسندگان
چکیده
Label-free methods to obtain hydrodynamic size from diffusion measurements are desirable in environments that contain multiple macromolecular species at a high total concentration: one example is the crowded cellular environment. In complex, multi-species macromolecular environments - in this article, we feature aqueous systems involving polymers, surfactants and proteins - the link between dynamics and size is harder to unpack due to macromolecular crowding and confinement. In this review, we demonstrate that the pulsed-field gradient NMR technique, with its spectral separation of different chemical components, is ideal for studying the dynamics of the entire system simultaneously and without labelling, in a wide range of systems. The simultaneous measurement of the dynamics of multiple components allows for internal consistency checks and enables quantitative statements about the link between macromolecular dynamics, size, complex formation and crowding in soft materials.
منابع مشابه
Macromolecular crowding in biological systems: hydrodynamics and NMR methods.
Most biologically relevant environments involve highly concentrated macromolecular solutions and most biological processes involve macromolecules that diffuse and interact with other macromolecules. Macromolecular crowding is a general phenomenon that strongly affects the transport properties of macromolecules (rotational and translational diffusion) as well as the position of their equilibria....
متن کاملMacromolecular crowding studies of amino acids using NMR diffusion measurements and molecular dynamics simulations
*Correspondence: William S. Price, Nanoscale Organisation and Dynamics Group, School of Science and Health, University of Western Sydney, Building 21.G.45, William Downes Avenue, Campbelltown Campus, Locked Bag 1797, Penrith, NSW 2751, Australia e-mail: [email protected] Molecular crowding occurs when the total concentration of macromolecular species in a solution is so high that a considerabl...
متن کاملProtein folding and binding in confined spaces and in crowded solutions.
Simple theoretical models are presented to illustrate the effects of spatial confinement and macromolecular crowding on the equilibria and rates of protein folding and binding. Confinement is expected to significantly stabilize the folded state, but for crowding only a marginal effect on protein stability is expected. In confinement the unfolded chain is restricted to a cage but in crowding the...
متن کاملImpact of macromolecular crowding on DNA replication
Enzymatic activities in vivo occur in a crowded environment composed of many macromolecules. This environment influences DNA replication by increasing the concentration of the constituents, desolvation, decreasing the degrees of freedom for diffusion and hopping of proteins onto DNA, and enhancing binding equilibria and catalysis. However, the effect of macromolecular crowding on protein struct...
متن کاملKinetics of polymer looping with macromolecular crowding: effects of volume fraction and crowder size.
The looping of polymers such as DNA is a fundamental process in the molecular biology of living cells, whose interior is characterised by a high degree of molecular crowding. We here investigate in detail the looping dynamics of flexible polymer chains in the presence of different degrees of crowding. From the analysis of the looping-unlooping rates and the looping probabilities of the chain en...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
- Progress in nuclear magnetic resonance spectroscopy
دوره 94-95 شماره
صفحات -
تاریخ انتشار 2016