Algorithms for Motif Search
نویسنده
چکیده
University of Connecticut 1.1 Abstract . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1-1 1.2 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1-1 1.3 Algorithms for Planted Motif Search . . . . . . . . . . . . . . . 1-2 A Probabilistic Analysis • The WINNOWER and SP-STAR Algorithms • Pattern Branching • Random Projection Algorithm • Algorithm PMS1 • Algorithm PMS2 • Algorithm PMS3 • Saving Memory • Extensions 1.4 Techniques for Edited Motif Search . . . . . . . . . . . . . . . . 1-10 An Algorithm Similar to PMS1 • A Randomized Algorithm 1.5 Algorithms for Simple Motifs Search . . . . . . . . . . . . . . . 1-14 A Simple Sorting Based Algorithm • Simple Motif Search (SMS) • Parallelism • TEIRESIAS Algorithm 1.6 Random Sampling . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1-17 1.7 Conclusions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1-18
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تاریخ انتشار 2005