Histone modifications are important epigenetic regulators and play a critical role in development. The targeting mechanism for histone modifications is complex and still incompletely understood. Here we applied a computational approach to predict genome-scale histone modification targets in humans by the genomic DNA sequences using a set of recent ChIP-seq data. We found that a number of histon...

The absence or the presence of low levels of the Coxsackievirus and adenovirus receptor (CAR) on several tumor types might limit the efficacy of recently proposed tumor-specific or conditionally replicative adenoviruses (CRAds). To address this issue, we used a genetic modification of the fiber knob in the context of an E1A-defective CRAd to allow CAR-independent target cell infection as a mean...

Genomic imprinting is an epigenetic modification in the germline leading to parental allele-specific gene expression in somatic cells. We have previously found that imprinted genes can be abnormally expressed or silenced in tumors and that the cyclin-dependent kinase inhibitor (CKI) CDKN1C (p57KIP2) is normally imprinted, with preferential expression of the maternal allele. Here we analyze the ...

The StyLTI restriction-modification system is common to most strains of the genus Salmonella, including Salmonella typhimurium. We report here the two-step cloning of the genes controlling the StyLTI system. The StyLTI methylase gene (mod) was cloned first. Then, the companion endonuclease gene (res) was introduced on a compatible vector. A strain of S. typhimurium sensitive to the coliphage la...

The maize (Zea mays) endosperm enzyme, ADP-glucose pyrophosphorylase, which produces ADP-glucose from ATP and glucose-l-phosphate, is an important enzyme in the synthesis of starch. ADP-glucose arising from the action of this enzyme is the major, if not sole, donor of glucose for starch biosynthesis. The enzyme is composed oftwo dissimilar subunits encoded by the two unlinked genes, Shrunken-2 ...

Prokaryotes have developed numerous innate immune mechanisms in order to fend off bacteriophage or plasmid attack. One of these immune systems is clustered regularly interspaced short palindromic repeats (CRISPR). CRISPR-associated proteins play a key role in survival of prokaryotes against invaders, as these systems cleave DNA of foreign genetic elements. Beyond providing immunity, these syste...

Linear models based on proportionality between variables have been commonly applied in biology and medicine but in many cases they do not describe correctly the complex relationships of living organisms and now are being replaced by nonlinear theories of deterministic chaos. Recent advances in molecular biology and genome sequencing may lead to a simplistic view that all life processes in a cel...