نتایج جستجو برای: rna editing

تعداد نتایج: 273016  

2013
Aamira Tariq Wojciech Garncarz Cornelia Handl Ales Balik Oliver Pusch Michael F. Jantsch

RNA editing by adenosine deaminases that act on RNA (ADARs) diversifies the transcriptome by changing adenosines to inosines. In mammals, editing levels vary in different tissues, during development, and also in pathogenic conditions. From a screen for repressors of editing we have isolated three proteins that repress ADAR2-mediated RNA editing. The three proteins RPS14, SFRS9 and DDX15 interac...

2017
Si-Hyun Lee Hwang-Phill Kim Jun-Kyu Kang Sang-Hyun Song Sae-Won Han Tae-You Kim

PURPOSE RNA editing generates protein diversity by altering RNA sequences in coding regions without changing the overall DNA sequence. Adenosine-to-inosine (A-to-I) RNA editing events have recently been reported in some types of cancer, but they are rare in human colorectal cancer (CRC). Therefore, this study was conducted to identify diverse RNA editing in CRC. MATERIALS AND METHODS We compa...

Journal: :RNA 2009
Sarah D Linnstaedt Wojciech K Kasprzak Bruce A Shapiro John L Casey

RNA editing by the host RNA adenosine deaminase ADAR1 at the amber/W site of hepatitis delta virus RNA plays a central role in the viral replication cycle by affecting the balance between viral RNA synthesis and packaging. Previously, we found that HDV genotype III (HDV-3) RNA can form two secondary structures following transcription: an unbranched rod structure, which is characteristic of HDV,...

Journal: :Bioinformatics 2010
Anmol M. Kiran Pavel V. Baranov

MOTIVATION RNA editing is a phenomenon, which is responsible for the alteration of particular nucleotides in RNA sequences relative to their genomic templates. Recently, a large number of RNA editing instances in humans have been identified using bioinformatic screens and high-throughput experimental investigations utilizing next-generation sequencing technologies. However, the available data o...

2015
Guixia Xu Jianzhi Zhang Naoko Takezaki

RNA editing is a posttranscriptional modification that can lead to a change in the encoded protein sequence of a gene. Although a few cases of mammalian coding RNA editing are known to be functionally important, the vast majority of over 2,000 A-to-I editing sites that have been identified from the coding regions of the human genome are likely nonadaptive, representing tolerable promiscuous tar...

Journal: :Genetics 2016
Tongjun Gu Daniel M Gatti Anuj Srivastava Elizabeth M Snyder Narayanan Raghupathy Petr Simecek Karen L Svenson Ivan Dotu Jeffrey H Chuang Mark P Keller Alan D Attie Robert E Braun Gary A Churchill

RNA editing refers to post-transcriptional processes that alter the base sequence of RNA. Recently, hundreds of new RNA editing targets have been reported. However, the mechanisms that determine the specificity and degree of editing are not well understood. We examined quantitative variation of site-specific editing in a genetically diverse multiparent population, Diversity Outbred mice, and ma...

2010
Sivan Osenberg Nurit Paz Yaacov Michal Safran Sharon Moshkovitz Ronit Shtrichman Ofra Sherf Jasmine Jacob-Hirsch Gilmor Keshet Ninette Amariglio Joseph Itskovitz-Eldor Gideon Rechavi

Adenosine to Inosine (A-to-I) RNA editing is a site-specific modification of RNA transcripts, catalyzed by members of the ADAR (Adenosine Deaminase Acting on RNA) protein family. RNA editing occurs in human RNA in thousands of different sites. Some of the sites are located in protein-coding regions but the majority is found in non-coding regions, such as 3'UTRs, 5'UTRs and introns - mainly in A...

2017
Heng Xiong Dongbing Liu Qiye Li Mengyue Lei Liqin Xu Liang Wu Zongji Wang Shancheng Ren Wangsheng Li Min Xia Lihua Lu Haorong Lu Yong Hou Shida Zhu Xin Liu Yinghao Sun Jian Wang Huanming Yang Kui Wu Xun Xu Leo J. Lee

With the advancement of second generation sequencing techniques, our ability to detect and quantify RNA editing on a global scale has been vastly improved. As a result, RNA editing is now being studied under a growing number of biological conditions so that its biochemical mechanisms and functional roles can be further understood. However, a major barrier that prevents RNA editing from being a ...

2012
Hu Zhu Daniel J. Urban Jared Blashka Matthew T. McPheeters Wesley K. Kroeze Piotr Mieczkowski James C. Overholser George J. Jurjus Lesa Dieter Gouri J. Mahajan Grazyna Rajkowska Zefeng Wang Patrick F. Sullivan Craig A. Stockmeier Bryan L. Roth

A-to-I RNA editing is a post-transcriptional modification of single nucleotides in RNA by adenosine deamination, which thereby diversifies the gene products encoded in the genome. Thousands of potential RNA editing sites have been identified by recent studies (e.g. see Li et al, Science 2009); however, only a handful of these sites have been independently confirmed. Here, we systematically and ...

2007
Tao He Pufeng Du Yanda Li

Although a large amount of experimentally derived information about RNA editing sites currently exists, this information has remained scattered in a variety of sources and in diverse data formats. Availability of standard collections for high-quality experimental data will be by of great help for systematic studying of RNA editing, especially for developing computational algorithm to predict RN...

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