نتایج جستجو برای: shotgun cellular systems

تعداد نتایج: 1586228  

Journal: :Physical review letters 2002
Bernard Derrida Thomas M A Fink

Assembling fragments randomly sampled from along a sequence is the basis of whole-genome shotgun sequencing, a technique used to map the DNA of the human and other genomes. We calculate the probability that a random sequence can be recovered from a collection of overlapping fragments. We provide an exact solution for an infinite alphabet and in the case of constant overlaps. For the general pro...

Journal: :Current protocols in bioinformatics 2005
Xiaoqiu Huang Shiaw-Pyng Yang

This unit describes how to use the Parallel Contig Assembly Program (PCAP) to assemble the data produced by a whole-genome shotgun sequencing project. We present a basic protocol for using PCAP on a multiprocessor computer in a 300-Mb genome assembly project. A support protocol to prepare input files for PCAP is also described. Another basic protocol for using PCAP on a distributed cluster of c...

2017
Thiago M. Batista Rennan G. Moreira Heron O. Hilário Camila G. Morais Glória R. Franco Luiz H. Rosa Carlos A. Rosa

We present the draft genome sequence of the type strain of the yeast Sugiyamaella xylanicola UFMG-CM-Y1884T (= UFMG-CA-32.1T = CBS 12683T), a xylan-degrading species capable of fermenting d-xylose to ethanol. The assembled genome has a size of ~ 13.7 Mb and a GC content of 33.8% and contains 5971 protein-coding genes. We identified 15 genes with significant similarity to the d-xylose reductase ...

2015
Emiko Matsunaga Yujiro Higuchi Kazuki Mori Kosuke Tashiro Satoru Kuhara Kaoru Takegawa

By screening for microbes that exhibit β-d-galactofuranosidase (Galf-ase) activity, a Streptomyces sp. strain, named JHA19, was isolated from a soil sample from Kagawa University, Japan, in 2010. Here, we report the results of whole-genome shotgun sequencing and found that the strain has four predicted Galf-ase genes.

2017
B M Carreres L de Jaeger J Springer M J Barbosa G Breuer E J van den End D M M Kleinegris I Schäffers E J H Wolbert H Zhang P P Lamers R B Draaisma V A P Martins Dos Santos R H Wijffels G Eggink P J Schaap D E Martens

The microalgae Tetradesmus obliquus is able to maintain a high photosynthetic efficiency under nitrogen limitation and is considered a promising green microalgae for sustainable production of diverse compounds, including biofuels. Here, we report the first draft whole-genome shotgun sequencing of T. obliquus The final assembly comprises 108,715,903 bp with over 1,368 scaffolds.

Afagh Zandi Fatemeh Fardis Vahidreza Ghezavati

Clustering parts and machines into part families and machine cells is a major decision in the design of cellular manufacturing systems which is defined as cell formation. This paper presents a non-linear mixed integer programming model to design cellular manufacturing systems which assumes that the arrival rate of parts into cells and machine service rate are stochastic parameters and descri...

M. Reza Akbari Jokar Soroush Saghafian

This paper proposes a new integrative view of manufacturing cell formation and both inter-cell and intra-cell layout problems. Cells formation and their popular bi-directional linear layout are determined simultaneously through a Dynamic Programming algorithm (with the objective of minimizing the inter-cell flow cost under a cell size constraint). This Dynamic Programming algorithm is implement...

Journal: :the modares journal of electrical engineering 2010
reza arablouei ayaz ghorbane

in this paper, a new propagation model based on utd for multiple diffraction paths in cellular mobile radio communications in urban environments is proposed. moreover, the most rigorous novel utd-based expressions for multiple diffractions by buildings and excess path losses are d - rived and analyzed. for this purpose, building rows are supposed to have rectangular cross-sections with the same...

Journal: :The Iowa Review 1972

Journal: :Science-Business eXchange 2008

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