PhosphoBase contains information about phosphorylated residues in proteins and data about peptide phosphorylation by a variety of protein kinases. The data are collected from literature and compiled into a common format. The current release of PhosphoBase (October 1998, version 2.0) comprises 414 phosphoprotein entries covering 1052 phosphorylatable serine, threonine and tyrosine residues. The ...

A substantial amount of knowledge about biomolecular interactions resides in the biomedical literature and has been increasingly made available as structured, curated database entries. Although recent research in biological assertion extraction has mostly focused on automatically detecting interacting entities, automated generation of provenance for interacting pairs remains of equal importance...

Many recommender systems have only implicit user feed-back. The two possible ratings are positive and negative,but only part of positive entries are observed. One-classmatrix factorization (MF) is a popular approach for suchscenarios by treating some missing entries as negative. Two major ways to select negative entries are by sub-sampling aset with similar size to that of o...

This article aims to conduct a thematic analysis through audience comments on the 2013 movie Her (written and directed by Spike Jonze). The is about romantic relationship between Theodore, who makes living writing handwritten letters for others Samantha-an operating system. In study, data set was created from comments, platform called "Ekşi Sözlük" used reach comments. An offline backup of titl...

Dual turbocharger turbine is fed by an unequal out-of-phase mass flow charge almost all the time which have significant effects on its performance parameters and flow phenomena which are not well known. Besides fully understanding the flow behavior in the radial turbine suffers from lack of detailed information about the secondary flows. This article studies the secondary flow structure within ...

We study properties of arithmetic progressions consisting of three squares; in particular, how one arithmetic progression generates infinitely many others, by means of explicit formulas as well as a matrix method. This suggests an equivalence relation could be defined on the arithmetic progressions, which lead to interesting problems for further study. The purpose of this paper is to investigat...

Dictionary markup (encoding) is one of the concerns of TEI (Text Encoding Initiative), an international project for text encoding. In this paper, we investigate ways to use and extend TEI encoding scheme for the markup of Korean dictionary entries. Since TEI suggestions for dictionary markup are mainly for western language dictionaries, we need to cope with problems to be encountered in encodin...