The study was conducted at Ardaita Agricultural Technical Vocational Education Training (ATVET) college dairy farm, to evaluate the reproductive performance of Holstein Friesian and its crosses with Boran cattle breeds. Data collected between 2000 and 2015 on reproductive traits (n=2632) were studied and analyzed using general linear model procedure. The overall estimated means for age at first...

Identification of genes determining the expression of economically important traits of plants and animals is a main research focus in agricultural genomics. Most of these traits are characterized by a wide variability of the expression of genes at certain loci called quantitative trait loci (QTL). Characterization of the chromosomal regions carrying QTL can be applied in marker-assisted Selecti...

OBJECTIVE The existing methods for identifying multiple rare variants underlying complex diseases in family samples are underpowered. Therefore, we aim to develop a new set-based method for an association study of dichotomous traits in family samples. METHODS We introduce a framework for testing the association of genetic variants with diseases in family samples based on a generalized linear ...

Social interactions among individuals can cause traits of individuals to depend on genes in other individuals, a phenomenon known as indirect genetic effects (IGE). IGEs profoundly affect response to natural selection and rates of genetic improvement in agriculture. This work identifies optimum experimental designs for estimating IGEs and provides tools for quantifying their magnitude. These fi...

Many bacteria form intimate associations with plants. Despite the agricultural and biotechnological significance of these bacteria, no whole genome sequences have yet been described. Plant-associated bacteria form a phylogenetically diverse group, with representative species from many major taxons. Sequence information from genomes of closely related bacteria, in combination with technological ...

Following domestication, crop lineages typically undergo diversification either to adapt to disparate habitats or to fill novel agricultural roles. This process has produced the numerous varieties found in modern-day crop germplasm collections. Here, we mapped quantitative trait loci (QTLs) underlying unique traits in the Hopi sunflower, a primitive, Native American domesticate. These traits in...

The main objective of the present study was to estimate genetic and phenotypic trends for body weight traits in Guilan province sheep. Traits included were birth weight (BW, n=14,549), 3-month weight (3MW, n=13,109) and 6-month weight (6MW, n=10,141). Data and pedigree information used in this study were collected during 1994 to 2011 by the Agricultural Organization of Guilan province in Iran. ...