Topology construction and topology maintenance are significant sub-problems of topology control. Spanning tree based algorithms for topology control are basically transmission range based type construction algorithms. The construction of an effective backbone, however, is indirectly related to the placement of nodes. Also, the dependence of network reliability on the communication path undertak...

Phenotypic traits, such as the frog advertisement call, are generally correlated with interspecific genetic variation, and, as a consequence of strong sexual selection, these behaviors may carry a phylogenetic signal. However, variation in acoustic traits is not always correlated with genetic differences between populations (intraspecific variation); phenotypic plasticity and environmental vari...

The prevalent strategy in the topology optimization phase is to select a subset of members existing in an excessively connected truss, called Ground Structure, such that the overall weight or cost is minimized. Although finding a good topology significantly reduces the overall cost, excessive growth of the size of topology space combined with existence of varied types of design variables challe...

motivated by the recent study on categorical properties of latticevalued topology, the paper considers a generalization of the notion of topological system introduced by s. vickers, providing an algebraic and a coalgebraic category of the new structures. as a result, the nature of the category   topsys   of s. vickers gets clari ed, and a metatheorem is stated, claiming that (latticevalu...

The topology of metabolic networks can provide insight not only into the metabolic processes that occur within each species, but also into interactions between different species. Here, we introduce a novel pair-wise, topology-based measure of biosynthetic support, reflecting the extent to which the nutritional requirements of one species could be satisfied by the biosynthetic capacity of anothe...

In the last two decades, a large number of whole-genome phylogenies have been inferred to reconstruct the Tree of Life (ToL). Underlying data models range from gene or functionality content in species to phylogenetic gene family trees and multiple sequence alignments of concatenated protein sequences. Diversity in data models together with the use of different tree reconstruction techniques, di...

MOTIVATION Phybase is an R package for phylogenetic analysis using species trees. It provides functions to read, write, manipulate, simulate, estimate, summarize and plot species trees, which contain not only the topology and branch lengths but also population sizes. AVAILABILITY The Phybase package is available at the R repository. The manual and supporting materials including source code, s...

A fundamental problem in reconstructing the evolutionary history of a set of species is to infer the topology of the evolutionary tree that relates those species. A statistical method for estimating such a topology from character data is called consistent if, given data from more and more characters, the method is sure to converge to the true topology. A number of popular methods are based on m...