background and objectives: the development of molecular biological techniques provide a method for direct detection and identification of pathogens. this study attempted to compare bacterial culture and pcr to detect s. agalactiae in cattle milk samples. the pcr method was based on using primers v1 and v2 derived from the 16s rrna gene. materials and methods: one hundred milk samples were colle...

this study utilized molecular methods to identify 22 isolates from traditional dairy products of azerbaijan. pcr was carried out using the universal primers of 16s rdna and a fragment of ~1500bp was amplified. amplified ribosomal dna restriction analysis was performed using bsuri, mspi, hindiii, taqi and bsp143i. ardra results were compared to the restriction profile in enzymatic restriction an...

uricase or urate oxidase (urate:oxygen oxidoreductase, ec 1.7.3.3), a peroxisomal enzyme which is found in many bacteria, catalyzes the oxidative opening of the purine ring of urate to yield allantoin, carbon dioxide, and hydrogen peroxide. in this study, the phylogeny of urate oxidase (uricase) producing bacteria was studied based on gene sequences of 16s rrna and uricase protein. representati...

Because of technological limitations, the primer and amplification biases in targeted sequencing of 16S rRNA genes have veiled the true microbial diversity underlying environmental samples. However, the protocol of metagenomic shotgun sequencing provides 16S rRNA gene fragment data with natural immunity against the biases raised during priming and thus the potential of uncovering the true struc...

A bacterial strain, designated BzDS03 was isolated from water sample, collected from Dal Lake Srinagar. The strain was characterized by using 16S ribosomal RNA gene and 16S-23S rRNA internal transcribed spacer region sequences. Phylogenetic analysis showed that 16S rRNA sequence of the isolate formed a monophyletic clade with genera Escherichia. The closest phylogenetic relative was Escherichia...

We developed a novel method for the quantitative detection of the 16S rRNA of a specific bacterial species in the microbial community by using deoxyribozyme (DNAzyme), which possesses the catalytic function to cleave RNA in a sequence-specific manner. A mixture of heterogeneous 16S rRNA containing the target 16S rRNA was incubated with a species-specific DNAzyme. The cleaved target 16S rRNA was...