Helical polymer bundles are an important fixture in biomolecular systems. The particular structural geometry of helix bundles is dependent on many factors including the length of the polymer chain. In this study, we performed Monte Carlo simulations of a coarse-grained model for helical polymers to determine the influence of polymer length on tertiary structure formation. Helical structures of ...

Properties of a simple model of polypeptide chains were studied by the means of the Monte Carlo method. The chains were built on the (310) hybrid lattice. The residues interacted with long-range potential. There were two kinds of residues: hydrophobic and hydrophilic forming a typical helical pattern -HHPPHPP-. Short range potential was used to prefer helical conformations of the chain. It was ...

The physics of a locked magnetic island chain maintained in the pedestal of an H-mode tokamak plasma by a static, externally generated, multi-harmonic, helical magnetic perturbation is investigated. The non-resonant harmonics of the external perturbation are assumed to give rise to significant toroidal flow damping in the pedestal, in addition to the naturally occurring poloidal flow damping. F...

The physics of a locked magnetic island chain maintained in the pedestal of an H-mode tokamak plasma by a static, externally generated, multi-harmonic, helical magnetic perturbation is investigated. The non-resonant harmonics of the external perturbation are assumed to give rise to significant toroidal flow damping in the pedestal, in addition to the naturally occurring poloidal flow damping. F...

We investigate the statistical mechanics of polymers with bending and torsional elasticity described by the helical wormlike model. Noticing that the energy function is factorizable, we provide a numerical method to solve the model using a transfer matrix formulation. The tangent-tangent and binormal-binormal correlation functions have been calculated and displayed rich profiles which are sensi...