نتایج جستجو برای: str haplotyping

تعداد نتایج: 6432  

Journal: :international journal of reproductive biomedicine 0
seyed mohsen miresmaeili dor mohammad kordi tamandani seyed mehdi kalantar

background: breast cancer is the most common malignancy in women. breast cancer type 1 susceptibility gene (brca1) is a tumor suppressor gene, involved in dna damage repair and in 81% of the breast-ovarian cancer families were due to brca1. in some clinically investigated genes, the intragenic marker polymorphism is important and the screening of such mutations is faster by using short tandem r...

Journal: :Forensic science international 2001
L Roewer M Krawczak S Willuweit M Nagy C Alves A Amorim K Anslinger C Augustin A Betz E Bosch A Cagliá A Carracedo D Corach A F Dekairelle T Dobosz B M Dupuy S Füredi C Gehrig L Gusmaõ J Henke L Henke M Hidding C Hohoff B Hoste M A Jobling H J Kärgel P de Knijff R Lessig E Liebeherr M Lorente B Martínez-Jarreta P Nievas M Nowak W Parson V L Pascali G Penacino R Ploski B Rolf A Sala U Schmidt C Schmitt P M Schneider R Szibor J Teifel-Greding M Kayser

The reference database of highly informative Y-chromosomal short tandem repeat (STR) haplotypes (YHRD), available online at http://ystr.charite.de, represents the largest collection of male-specific genetic profiles currently available for European populations. By September 2000, YHRD contained 4688 9-locus (so-called "minimal") haplotypes, 40% of which have been extended further to include two...

Journal: :The Journal of heredity 2007
Shu-Jin Luo Warren E Johnson Victor A David Marilyn Menotti-Raymond Roscoe Stanyon Qing Xiu Cai Thomas Beck Naoya Yuhki Jill Pecon-Slattery James L D Smith Stephen J O'Brien

Y chromosome haplotyping based on microsatellites and single nucleotide polymorphisms (SNPs) has proved to be a powerful tool for population genetic studies of humans. However, the promise of the approach is hampered in the majority of nonhuman mammals by the lack of Y-specific polymorphic markers. We were able to identify new male-specific polymorphisms in the domestic cat Felis catus and 6 ad...

Journal: :Inf. Comput. 2010
Michael Elberfeld Till Tantau

Haplotyping, also known as haplotype phase prediction, is the problem of predicting likely haplotypes based on genotype data. One fast computational haplotyping method is based on an evolutionary model where a perfect phylogenetic tree is sought that explains the observed data. In their CPM’09 paper, Fellows et al. studied an extension of this approach that incorporates prior knowledge in the f...

2012
Michael Elberfeld Till Tantau

Haplotyping, also known as haplotype phase prediction, is the problem of predicting likely haplotypes based on genotype data. One fast computational haplotyping method is based on an evolutionary model where a perfect phylogenetic tree is sought that explains the observed data. An extension of this approach tries to incorporate prior knowledge in the form of a set of candidate haplotypes from w...

Journal: :genetics in the 3rd millennium 0
sirous zeinali marziyeh mojbafan hamideh bagherian elham davoodi

limb girdle muscular dystrophies (lgmds) are group of neuromuscular disorders which are characterized by progressive muscle weakness and they mostly affect the pelvic and shoulder girdle muscles. this disease can be inherited as autosomal dominant (lgmd1) and autosomal recessive (lgmd2). so far seven autosomal dominant and 20 autosomal recessive forms of this disease have been recognized reflec...

Journal: :genetics in the 3rd millennium 0
مریم شیخ اسلام maryam sheykholeslam department of biology, faculty of science, university of isfahan, isfahan, iran. صادق ولیان بروجنی sadeq vallian borojeni

the hla class ii genes of human major histocompatibility complex (mhc) exhibit an extensive degree of genetic polymorphism. this region subdivides into four sub-regions dp, do, dq, and dr. there are five different dr haplotypes that all contain a highly polymorphic allele called hla-drb1. in most recent studies, the association between hla-drb1 and a large number of diseases such as multiple sc...

2005
Xiang-Sun Zhang Rui-Sheng Wang Ling-Yun Wu Luonan Chen

One of the main topics in genomics is to determine the relevance of DNA variations with some genetic disease. Single nucleotide polymorphism (SNP) is the most frequent and important form of genetic variation which involves a single DNA base. The values of a set of SNPs on a particular chromosome copy define a haplotype. Because of its importance in the studies of complex disease association, ha...

Journal: :Discrete Mathematics 2006
Jens Gramm Tzvika Hartman Till Nierhoff Roded Sharan Till Tantau

Recent technologies for typing single nucleotide polymorphisms (SNPs) across a population are producing genome-wide genotype data for tens of thousands of SNP sites. The emergence of such large data sets underscores the importance of algorithms for large-scale haplotyping. Common haplotyping approaches first partition the SNPs into blocks of high linkage-disequilibrium, and then infer haplotype...

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