نتایج جستجو برای: multilocus sequence analysis

تعداد نتایج: 3110247  

Journal: :Avian diseases 2013
Jessica L Danzeisen Yvonne Wannemuehler Lisa K Nolan Timothy J Johnson

To examine the correlations between virulence genotyping and multilocus sequence analysis of Escherichia coli from poultry and humans, 88 isolates were examined. The isolates were selected from a population of over 1000 based on their assignment to nine different virulence genotyping clusters. Clustering based on multilocus sequence analysis mostly correlated with virulence genotyping, although...

Candida spp. are ubiquitous yeasts commonly. Those are commensally and opportunist pathogens in humans. Candidiasis in immunocompromised patients and patients with severe underlying diseases or critical illnesses need aggressive diagnosis or treatment procedures. Candida albicans (C. albicans) is the most frequently isolated species. For prevention of nosocomial infections caused by C. albicans...

2014
Qiliang Lai Yang Liu Jun Yuan Juan Du Liping Wang Fengqin Sun Zongze Shao

Thalassospira bacteria are widespread and have been isolated from various marine environments. Less is known about their genetic diversity and biogeography, as well as their role in marine environments, many of them cannot be discriminated merely using the 16S rRNA gene. To address these issues, in this report, the phylogenetic analysis of 58 strains from seawater and deep sea sediments were ca...

Journal: :Antimicrobial agents and chemotherapy 2013
Javier Antonio Escobar Pérez Narda María Olarte Escobar Betsy Castro-Cardozo Ismael Alberto Valderrama Márquez Martha Isabel Garzón Aguilar Leslie Martinez de la Barrera Esther Rocio Barrero Barreto Ricaurte Alejandro Marquez-Ortiz Maria Victoria Moncada Guayazán Natasha Vanegas Gómez

Six multiresistant, NDM-1-producing Klebsiella pneumoniae strains were recovered from an outbreak that affected six neonatal patients in a Colombian hospital. Molecular analysis showed that all of the isolates harbored the blaNDM-1, qnrA, and intI1 genes and were clonally related. Multilocus sequence typing showed that the isolates belonged to a new sequence type (ST1043) that was different fro...

Journal: :Molecular biology and evolution 2008
Tae-Kun Seo

Phylogeny estimation is extremely crucial in the study of molecular evolution. The increase in the amount of available genomic data facilitates phylogeny estimation from multilocus sequence data. Although maximum likelihood and Bayesian methods are available for phylogeny reconstruction using multilocus sequence data, these methods require heavy computation, and their application is limited to ...

Journal: :Applied and environmental microbiology 2011
Sarah P Preheim Sonia Timberlake Martin F Polz

We synthesized population structure data from three studies that assessed the fine-scale distribution of Vibrionaceae among temporally and spatially distinct environmental categories in coastal seawater and animals. All studies used a dynamic model (AdaptML) to identify phylogenetically cohesive and ecologically distinct bacterial populations and their predicted habitats without relying on a pr...

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